A motif searching program availalbe

[Lemieux Sebastien]

ping at bnlux1.bnl.gov (Shiping Zhang) writes:

>A motif searching program is available at the www site

>http://genome1.bio.bnl.gov/bbq.html

>It can search GenBank, Swiss-prot or your own DNA/protein sequences
>for motifs defined in Prosite or defined by yourself.  You can
>also retrieve entries from Prosite.

Would it be possible to get an algorithm to find motifs without
explicitly defining them?  This could be very interesting and really
helpful [especially in the context of homology 3d modelling].

--
| Sebastien Lemieux, dept. biol.  ||  Look behind the wave of changes
| lemieuse at alize.ERE.UMontreal.CA ||  Feel the future taking shape
| PGP public key on finger.       ||  I can see the world to come (KJ)
  http://alize.ere.umontreal.ca/~lemieuse/