cDNA extraction

risler at cgmvax.cgm.cnrs-gif.fr risler at cgmvax.cgm.cnrs-gif.fr
Sun Jan 8 17:09:32 EST 1995


R. Doelz writes:

>
>SRS can extract CDS from entire sequende databases and combine, map, filter
>with whatever database or database query you want (currently, > 50 databases.
>Check out http://www.ch.embnet.org/srs/status.html for reference).
>

Reinhardt, this is quite true! However: is SRS able to use the JOIN 
feature?
Last time I used it for this purpose, SRS extracted correctly all the CDS 
but created one entry for each CDS. 
As I understand it, the problem here is to JOIN all the exons of one given 
gene into one single sequence ("cDNA"). Hence my previous answer about 
ACNUC.

If SRS can do this, I would be VERY interested to learn the trick!

Regards,

Jean-Loup


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