GCG/SRS

Thure Etzold etzold at bioslave.uio.no
Sun Jan 8 10:03:13 EST 1995


risler at cgmvax.cgm.cnrs-gif.fr wrote:
: Hello netters,

: First of all, happy new year to all of you.

: Second: I have a problem with SRS. I sent mails to T. Etzold and P. Rice 
: but in the absence of answers (so far) I'm trying to get help from the
: gurus on the net.

: Here it is:


: In a recent weekly update of the EBI databank appeared the sequences of 
: yeast chromosome II and a long E. coli contig, both of them having more 
: than 350,000 bp. As you know, GCG will split them into 2 parts.

: Now, the second part of the GCG formatted files contains NO accession 
: number. When SRS builds its indices from the GCG files, it is confused by 
: the absence of AC (at least that's what I understand) and it crashes.
: Very very ennoying...

this problem exists only with SRS version 3.1 ...it is fixed for 4.0 ..
here an oversize GCG entry with all continuations is treated as one entry
... I am working on the fix for 3.1 ...please have patience

regards
thure etzold









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