Colorful Alignment Software

A. Jamie Cuticchia jamie at
Tue Jul 11 12:41:45 EST 1995

I am looking for software (public domain or commercial) which will align DNA and
Protein Sequences and show the areas of alignment in color.  Additionally, it is
desired to have regions of functional significance (e.g., leucine zippers, areas of
high hydrophobicity, etc.) highlighted in color as well.

Any suggestions would be much appreciated.

Many thanks.

AJ Cuticchia
jamie at

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