Fragment assembly question
mylerpj at u.washington.edu
Fri Mar 31 12:56:59 EST 1995
On 30 Mar 1995, J. Logan Black wrote:
> Are there any fragment assembly programs available for PC other than
> netting into GCG somewhere? Maybe I am dense but GCG is awkward
> and I would like to find a better way. When assembling a big project GCG is
> too difficult to use. Also what is the best protein software available for PC.
> I need to convert DNA/RNA to protein and analyze the protein for MW and
> other characteristics.
DNASTAR provides a very good sequencing fragment assembly program
(SEQMAN), but is expensive. DNAMAN also has a program, but I haven't
used it yet ( I have a demo version). GENERUNNER promises to have one
soon, as well. These programs will all do the basic protein analyses you
want, to greater or lesser extents. I have yet to find a single program
which will do everything I want, so I generally switch betweenb several
(including GCG), which is a bit of a pain.
Peter J. Myler phone: (206) 284-8846x332
Seattle Biomedical Research Institute FAX: (206) 284-0313
4 Nickerson Street e-mail: MYLERPJ at U.WASHINGTON.EDU
Seattle, WA 98109-1651
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