Sequence alignment documentation

Peter Rice pmr at
Thu Aug 15 19:23:43 EST 1996

In article <2016.9608152141 at dse> o.gallay at writes:
>   Does anyone out there know of a program that will draw a frame around 
>   homologous segments of sequence in alignments, ie. like "prettybox" but 
>   without the shading?  I've often seen this sort of frame in publications, but 
>   everyone I know thinks this has to be done by hand.  

EGCG has PRETTYPLOT, which does exactly this (and some extras) in addition

EGCG works with GCG 8.1, and is available from

URL for more information:

Peter Rice                           | Informatics Division,
E-mail: pmr at             | The Sanger Centre,
Tel: (44) 1223 494967                | Wellcome Trust Genome Campus,
Fax: (44) 1223 494919                | Hinxton, Cambridge, CB10 1SA,
URL:   | England

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