Sequence alignment documentation

Peter Rice pmr at sanger.ac.uk
Thu Aug 15 19:23:43 EST 1996


In article <2016.9608152141 at dse> o.gallay at ic.ac.uk writes:
>   Does anyone out there know of a program that will draw a frame around 
>   homologous segments of sequence in alignments, ie. like "prettybox" but 
>   without the shading?  I've often seen this sort of frame in publications, but 
>   everyone I know thinks this has to be done by hand.  

EGCG has PRETTYPLOT, which does exactly this (and some extras) in addition
to PRETTYBOX.

EGCG works with GCG 8.1, and is available from
ftp://ftp.sanger.ac.uk/pub/pmr/egcg81/

URL for more information:

http://www.sanger.ac.uk/egcg/prettyplot.html

--
------------------------------------------------------------------------
Peter Rice                           | Informatics Division,
E-mail: pmr at sanger.ac.uk             | The Sanger Centre,
Tel: (44) 1223 494967                | Wellcome Trust Genome Campus,
Fax: (44) 1223 494919                | Hinxton, Cambridge, CB10 1SA,
URL: http://www.sanger.ac.uk/~pmr/   | England




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