rmh at gpu.srv.ualberta.ca
Fri Feb 23 11:33:35 EST 1996
Kiyoshi Gotow wrote:
> When you see the argument window, the program "protml" is already running.
> The first word "protml" is unnecessary. In addition to the input file
> format command "-I", you need to specify the model of analysis and other
> parameters that you want to use in the maximum likelihood method. The file
> "PROTML.EXA" in the package may give you some idea of the model, search
> strategy or mode, and others given by ProtML 2.2.
> I hope this helps.
> Kiyoshi Gotow, Ph.D.
> Department of Human Life and Culture
> Junior College, Seitoku University
> gotow at vir.bekkoame.or.jp
Thank you for your prompt reply. I have tried what you suggested and the
error message did clear up but I still believe I am doing something wrong.
The output window does not display any of the results. I change the command
line to "-I-j-e-D surfaceprotein". Perhaps I have too many parameters
(switches) this time. I also tried modifying my original commands to "-I-j
surfaceprotein" and still not results. I looked at the FORMAT file that came
with the package and the README file. I could not view the .EXA file for some
reason. Perhaps I do not have an appropriate text editor. Is there any
documentation that has more detailed instructions about it's use? Or perhaps
you have futher suggestions.
Some other commands I have tried:
Thank You For Your Time
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