FASTA-like program available by ftp?

Morten Andersen moan at SKYDANCER.BMC.UU.SE
Mon Jan 15 11:14:41 EST 1996


Does anyone know of a database search program such as FASTA which can be
downloaded to my own computer, and use my own local databases? 

I have BLAST already, but want something that emphasises on whole-length
(protein) sequences and allows introduction of gaps for optimal alignment
instead of BLAST's HSPs (high-scoring SEGMENT pairs). 

Thanks!

=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
 MORTEN STIG ANDERSEN           Department of Molecular Biology
 Fax: +46 18 557723             Biomedical Center, University of Uppsala
 Tel: +46 18 174215             BOX 590, S-751 24 Uppsala, SWEDEN







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