degenerate pattern searches with mismatches

mathog at seqaxp.bio.caltech.edu mathog at seqaxp.bio.caltech.edu
Tue Jan 16 11:35:57 EST 1996


In article <vines.q5x7+Cigyka at VinIP.cc.kuleuven.ac.be>, Marc.VanRanst at rega.kuleuven.ac.be ("marc van ranst") writes:
>Hi !
>I would like to search the databanks with the following amino acid 
>sequence pattern
>
>(GM)PV(WT)(RHFI)I(ILG)(KL)K(AVM)T(EG)H(LMD)(ME)(AS)VG(TSR)(APE)
>
<snip>
>
>Are there other email servers or WWW servers that offer such services, 

I don't know about a net resource, but if you have access to a system with
GCG installed the FINDPATTERNS program will do this. 

Regards,

David Mathog
mathog at seqaxp.bio.caltech.edu
Manager, sequence analysis facility, biology division, Caltech 




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