Smith Waterman in C

Keith Robison robison at
Tue Jul 9 11:46:50 EST 1996

Hemant Varma (varma at wrote:
: Hello Folks,
: 	     I am looking for a C implementation of 
: Smith -Waterman algorithm for sequence alignment. If
: anybody could please indicate where I can find such a
: program, I would really appreciate it. 

Xiaoqiu Huang's sim is exactly this.  I don't know the FTP site offhand,
but I think it's at Penn State ( domain name) somewhere.

Keith Robison
Harvard University
Department of Molecular & Cellular Biology
Department of Genetics 

robison at 

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