Smith Waterman in C

[Keith Robison]

Hemant Varma (varma at sb10.llnl.gov) wrote:
: Hello Folks,
: 	     I am looking for a C implementation of 
: Smith -Waterman algorithm for sequence alignment. If
: anybody could please indicate where I can find such a
: program, I would really appreciate it. 

Xiaoqiu Huang's sim is exactly this.  I don't know the FTP site offhand,
but I think it's at Penn State (psu.edu domain name) somewhere.


Keith Robison
Harvard University
Department of Molecular & Cellular Biology
Department of Genetics 

robison at mito.harvard.edu