Global Alignment using a FASTA type algorithm

Gautam Singh/NCGR Gautam_Singh/NCGR at NOTES.NCGR.ORG
Tue Jul 9 14:46:20 EST 1996


Hi all:

The current form of FASTA finds regions of local similarity between two 
sequences. Is there a similar program (c/c++ function) that computes the global 
alignment using the FASTA algoritm. Essentially,  I would like to get a SIM 
(Huang, et. al.) type complete  alignment from a program that uses FASTA ( or 
its derivitive)  as its core alignment engine.

Thanks!

Gautam




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