Script for extracting genes ?
cookj at landcare.cri.nz
Mon Jul 22 15:51:10 EST 1996
In article <Pine.SOL.3.93.960709132407.17049A-100000 at evolution> Thomas Sicheritz <thomas at evolution.bmc.uu.se> writes:
>From: Thomas Sicheritz <thomas at evolution.bmc.uu.se>
>Subject: Script for extracting genes ?
>Date: Tue, 9 Jul 1996 13:49:38 +0200
>I need a script/program which can scan an EMBL or Genbank file and
>extract all gene names with start-stop, length, type, direction ...
>(maybe exon information too)
>the output should be something like that:
>name type dir start stop length
>rps16:x2:2 CDS R 4487 4635 148
>rps16:x1:2 CDS R 5514 5553 39
>trnQ tRNA R 6615 6687 72
>psbK CDS F 7033 7218 185
>psbI CDS F 7608 7718 110
>trnS tRNA R 7829 7916 87
>ORF100 CDS F 8349 8651 302
>has anybody seen or written such a script/program (in perl,tcl,C,C++) ?
Are all this required data held in these EMBL or Genbank files, and are these
two source formats text?
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