Annotating sequence for publication
gjb at bioch.ox.ac.uk
Fri Jul 26 06:14:18 EST 1996
James D. Tisdall wrote:
> What software are you using for the purpose of creating figures that
> display sequence with annotation, such as text and highlighting?
> What I would find most useful would be Mac or Unix-based software that
> outputs graphics in a few of the most popular formats, e.g.
> encapsulated color postscript. But any solution you use would be
> of interest.
You could try ALSCRIPT. This takes an alignment and produces
PostScript. It is pretty flexible, but takes a little learning.
see ftp://geoff.biop.ox.ac.uk/README for download instructions.
see http://geoff.biop.ox.ac.uk/manuals/alscript/alscript.html for the
on-line manual. See
http://geoff.biop.ox.ac.uk/papers/alscript/alps2.html for an
on-line preprint of the paper published in Prot. Eng. in 1993.
You may also like to try the AMAS server on the WWW. AMAS allows a
multiple alignment to be analysed for "interesting" conservation
patterns - one output is a PostScript file that boxes and shades the
Geoffrey J. Barton, Laboratory of Molecular Biophysics, University of
Rex Richards Building, South Parks Road, Oxford OX1 3QU, U.K.
mailto:gjb at bioch.ox.ac.uk, Tel: +44 1865 275368, Fax: +44 1865 510454,
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