Searching for DNA binding sites

Mary mary at
Mon Mar 4 18:37:12 EST 1996

I would like to look for patterns/homologies within a 50 kb contiguous
DNA sequence. I am looking for hints regarding a putative binding site.
I don't have a very good idea what the site is but I can make some
guesses. Can anyone tell me the best program for this purpose?

Mary Fernandes

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