Amino Acid Alignment Formating

James O. McInerney J.McInerney at
Wed May 29 12:19:54 EST 1996

Jeffrey J. Huckaby wrote:

> Netters
>         I am search for a Mac and/or Unix SunOS program that formats
> multiple sequence alignments for publication such that the similar 
> amino acids are shaded and the identities are boxed...or some format 
> close to this one.

Have you tried seqapp/seqpup (all platforms incl MacOS) by Don Gilbert 


This should do what you want.  Lots of bells and whistles.  Careful, 
though and save often and it still is not bug-free.


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