ORF Predictor

Peter J. Myler mylerpj at u.washington.edu
Fri Nov 1 15:17:49 EST 1996


Try Testcode or Codonpreference in GCG.  I have found them to be very good
using Leishmania genomic DNA, but it doesn't have any introns.  Should be
OK using ESTs.

Good luck

Peter
-- 
=====================================================
Peter J. Myler
Seattle Biomedical Research Institute
4 Nickerson Street
Seattle, WA  98109-1651
phone: (206) 284-8846x332
FAX: (206) 284-0313
e-mail: MYLERPJ at U.WASHINGTON.EDU
=====================================================





Tim Bolling 7-2290 4MD <bollingt at ugene1.abbott.com> wrote in article
<327A2981.5062 at ugene1.pprd.abbott.com>...
> Can anyone suggest a good ORF prediction program that runs on UNIX?  
> I am interested in one that would predict the MOST likely reading
> frame in an EST (not just all orf that start with a MET and end with
> a termination codon and are of a particular size).  Thanks for any
> suggestions.
> 
> Tim Bolling
> bollingt at ugene1.pprd.abbott.com
> 
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