ORF Predictor

Peter J. Myler mylerpj at u.washington.edu
Fri Nov 1 15:17:49 EST 1996

Try Testcode or Codonpreference in GCG.  I have found them to be very good
using Leishmania genomic DNA, but it doesn't have any introns.  Should be
OK using ESTs.

Good luck

Peter J. Myler
Seattle Biomedical Research Institute
4 Nickerson Street
Seattle, WA  98109-1651
phone: (206) 284-8846x332
FAX: (206) 284-0313

Tim Bolling 7-2290 4MD <bollingt at ugene1.abbott.com> wrote in article
<327A2981.5062 at ugene1.pprd.abbott.com>...
> Can anyone suggest a good ORF prediction program that runs on UNIX?  
> I am interested in one that would predict the MOST likely reading
> frame in an EST (not just all orf that start with a MET and end with
> a termination codon and are of a particular size).  Thanks for any
> suggestions.
> Tim Bolling
> bollingt at ugene1.pprd.abbott.com
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