ORF Predictor

Emmanuel Skoufos skoufs at pantheon.yale.edu
Mon Nov 4 13:58:24 EST 1996


On 1 Nov 1996, Tim Bolling 7-2290 4MD wrote:

> Can anyone suggest a good ORF prediction program that runs on UNIX?  
> I am interested in one that would predict the MOST likely reading
> frame in an EST (not just all orf that start with a MET and end with
> a termination codon and are of a particular size).  Thanks for any
> suggestions.

You can try GRAIL; documentation and guide is at:

<http://avalon.epm.ornl.gov/manuals/grail-genquest.9407.html#GrailOverview>

A good Web-based collection of ORF finding engines is at the Baylor
College of Medicine Search launcher pages:

<http://dot.imgen.bcm.tmc.edu:9331/seq-search/gene-search.html>



Emmanuel Skoufos, Ph.D.
Yale University School of Medicine
Section of Neurobiology
333 Cedar Street, 236 FMB
New Haven, CT 06520
e-mail:emmanouil.skoufos at yale.edu
Phone: (203) 785-4336
Fax: (203) 785-6990
gene discovery page:
http://www.geocities.com/CapeCanaveral/1915/gdp.html





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