Protein Secondary Structure Program

Hans Jürgen Hoffmann hjh at post1.tele.dk
Sat Nov 30 01:33:06 EST 1996


On 16 Nov 1996 02:35:08 GMT, ipark at bioneer.kaist.ac.kr (Inyup Park)
wrote:
>: I need to know if there is any program on the net that can take a protein 
>: sequence and give a sort of graphycal output of its secondary structure. I 
>: currently use the method by Gardiner in PCGENE program. That gives a linear 
>: representation of the secondary structure like this:
>
>: xxxxxxxxxxxxx*****- - - - - xxxxx- - >>>- - xxxxx etc., 
>
>: where: 
>
>: xxxxx = helical,
>
>: ****** = coil,  
>
>: - - - - - = extended and 
>
>: >>>> = turn
>
>: Does anybody knows of any program that outputs the  putative  secondary
>: structure structure of the protein in a graphycal form.?

try Seqaid 381, it is a dos program, but does the job, and it is
shareware or freeware.
Find it at the University of Stellenbosch FTP archive in MolBiol.
regards,
hjh





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