FASTA setting ktup

[Steven Brenner]

cupton at uvic.ca ( Chris Upton) writes:

>Hi,
>  When running fasta locally (SGI), is it possible to set the ktup?

>I've tried a few things, but it doesn't seem to change. I thought this
>should work:

>fasta -someparameters test.pep lib ktup 1


Just omit the word 'ktup':

myprompt% fasta3_t -someparam mypep.fa mylib.seg.fa 1


(The above would run threaded fasta version 3; omit the t for
non-threaded and omit the 3_t for earlier versions.)

-- 
Steven E. Brenner                    | S.E.Brenner at bioc.cam.ac.uk 
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