software for analysing sequence features...

[Mick Partis]

You need to use a database of motifs to run your sequence against.  The 
usual one is PROSITE, and there is a previous posting this week by 
Bernard Bellon on that topic and on-line access to the service 
(http://www.ebi.ac.uk/searches/prosite_input.html).  If you want to run 
the motif searches on your own machine then you would need MacPattern or 
Prosearch for the Mac and PC respectively, which are available from the 
EMBL software archives at ftp://ftp.ebi.ac.uk/pub/software/dos/ for PC 
and ftp://ftp.ebi.ac.uk/pub/software/mac/ fot the MAC.

-- 
mick.partis at hri.ac.uk         Horticulture Research International
http://www.geocities.com/CapeCanaveral/1957/