protein sequence analysis

Tracy B Norris tnorris at molbio.uoregon.edu
Tue Apr 1 23:42:35 EST 1997


I am looking for a software program that will allow me to do specialized
alignments of protein sequence. I would like to align structural elements
of one sequence with another protein sequence. I have tried alignments in
MegAlign, but as a consequence of alignment the program puts gaps in the
structural elements of the first sequence (it's shorter than the other). 

Any ideas?

Thanks,

Tracy




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