software for predicting antigenesity

Sebastian Bunka bunka at i112pc09.vu-wien.ac.at
Mon Apr 7 02:53:55 EST 1997


In article <9704062241.AB28999 at mail>,
	congjy at MAIL.TSINGHUA.EDU.CN (Jinyang Cong) writes:
> Hi, I would appreciate very much if someone can tell me where I can get a 
> software to analyze a amino acid sequence of any protein to predict its 
> antigenic epitopes. I am working at using synthetic peptides as antigens to 
> make monoclonal antibodies. This kind of software is very useful for me. Any 
> information would be welcome.
>     Cong, JY 
> 
I know of 2 or three DOS programs that analyse an AA sequence
using the Chou and Frasman algorythms.
You can find 1 or two at ftp.bio.indiana.edu in the
pub/molbio... subdirs, ibmpc, "seqaid.uue", "sqaid381.zip"
and maybe prograph. see also

(91)sunsite.unc.edu

     91  /pub/academic/biology/molbio/ibmpc
       -r--r--r--    4788         23:00:00 12 May 1993 GMT     prograph.zip

(113)bioinformatics.weizmann.ac.il

     113  /pub/software/dos
       -r--r--r--    83354        01:00:00 02 Nov 1993 GMT     predict.exe

(134)ftp.jussieu.fr

     134  /pub16/pc/garbo/math
       -r--r--r--    26785        23:00:00 20 May 1989 GMT     predict.zip

(135)ftp.cnr.it

     135  /pub/PC-IBM/garbo.uwasa.fi/math
       -r--r--r--    1289220      21:05:00 03 Aug 1996 GMT     predict.zip

Hope this helps, SWB
-- 

;-)
------------------------------------------------------------------------
Sebastian Bunka                 ph. (+43-1) 250 77 4208
Institute of                    FAX (+43-1) 250 77 4290
Medical Chemistry               email: Sebastian.Bunka at vu-wien.ac.at
University of Veterinary Medicine - Vienna - Austria
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