Allignements visualization

aiyar at ebv.oncology.wisc.edu aiyar at ebv.oncology.wisc.edu
Tue Apr 29 17:45:43 EST 1997


On 29 Apr 1997 10:41:45 -0700,
Matteo Turri (turrim at kispi.unizh.ch) wrote:
>            I use Clustalw to align my protein sequences; I'm looking for a
>software that provides flexible tool for sequences allignements
>visualization, something that will shade the regions of similarity and
>omology.

I use a program called SeaView for this purpose.  It works very
well with the output from Clustalx, a more recent version of
Clustalw.  Seaview is available from biom3.univ-lyon1.fr under
the directory /pub/mol_phylogeny/seaview

Ashok
-- 
Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at ebv.oncology.wisc.edu




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