Allignements visualization

aiyar at aiyar at
Tue Apr 29 17:45:43 EST 1997

On 29 Apr 1997 10:41:45 -0700,
Matteo Turri (turrim at wrote:
>            I use Clustalw to align my protein sequences; I'm looking for a
>software that provides flexible tool for sequences allignements
>visualization, something that will shade the regions of similarity and

I use a program called SeaView for this purpose.  It works very
well with the output from Clustalx, a more recent version of
Clustalw.  Seaview is available from under
the directory /pub/mol_phylogeny/seaview

Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at

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