Alignment Similarity

[ketchup]

For PC/Windows look at GeneDoc.

http://www.cris.com/~ketchup/genedoc.shtml

The results can also be graphed in a CDF plot.

Karl Nicholas.


Paul DiBello <Paul.DiBello at yale.edu> wrote:

>Hi,
>    I am looking for some way to construct a matrix of similarity
>between protein sequences in a multiple alignment.    I would like to
>express the similarity as percent identical residues.  Is there any
>software out there that will do this?

>Thanks.  -Paul