Alignment Software

Chris Fields cjfields at
Wed Aug 20 13:12:30 EST 1997

Is there anyway to use ClustalW or a similar program to align DNA sequences
taking codon usage and G+C content into consideration?  I am trying to align
~30 sequences from a large range of bacteria with different codon usages and
G+C contents, and I already have done the protein alignments.

C. J. Fields
Graduate Student, Dept. of Biological Sciences
The University of North Texas
Denton, TX

cjfields @ (Remove the spam-blocking spaces before sending)
"Giving money and power to government is like giving
 whiskey and car keys to teenage boys"
    -P. J. O'Rourke
"Join the military.  Travel to exotic places, meet
exciting people, then kill them"

More information about the Bio-soft mailing list