codon usage bias
jamm at nhm.ac.uk
Wed Aug 27 07:03:42 EST 1997
Janssens at agr.kuleuven.ac.be wrote:
> I'm looking for a method to analyse differences in codon usage tables.
> I know
> the gcg programs codonfrequency, preference and correspond, but what
> looking for is a way to calculate the error-level. I tried it with
> but that seems not to be correct. Does anyone know a SAS-program to do
> this or
> another downloadable algorithm.
> Hans Vermeiren
> FA Janssens Laboratory for Genetics
> W. De Croylaan 42
> B-3001 Heverlee
> janssens at agr.kuleuven.ac.be
I have made a program available for analysing codon usage variation. It is
It is designed to analyse differences in codon usage patterns. It might do
what you wish.
Alternatively, you could try John Peden's program available from:
which might also do what you wish.
Email me privately if you wish to elaborate on your request.
James O. McInerney email: J.mcinerney at nhm.ac.uk
Senior Scientific Officer, phone: +44 171 938 9247
Department of Zoology, Fax: +44 171 938 9158
The Natural History Museum,
London SW7 5BD.
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