Mol. Biol. Software
thomas at evolution.bmc.uu.se
Sat Dec 20 03:25:36 EST 1997
William Coetzee (coetzeew at is2.nyu.edu) wrote:
>Which is the best computer program to use in the molecular biology
> under linux:
> database of clones, primers
> restriction anaylsis
> multiple alignment
> fragment assembly
> profile anaylsis
> ORF analysis
I doubt that there is an "efficient" program which combines all your requests
into a single application ... but there a several freeware (most of them)
excellent programs that will help you a a lot.
We are currently working on a Clone/Cosmid/Sequence managing SQL database
with a Tcl/Tk interface for our ongoing Genome Sequencing Project.
This application CAPdb (Click And Pray database) tries to glue together most
of the applications needed for Sequence/Genome analysises. (public release 1998 ???)
(Gnomics Software, http://evolution.bmc.uu.se/~siv/gnomics/)
There are a lot of programs for Win95/Mac too, but if you choose the Linux OS,
you'll get access to almost all biological programs available ...
A good start is "Molecular Linux" att http://evolution.bmc.uu.se/~thomas/mol_linux
(Right now I just know of one single program that I'd like to run
but which isn't available yet for linux ... PAUP ... but someone told me it's on the way)
Sicheritz Ponten Thomas E. UPPSALA UNIVERSITY
Vaksalagatan 29C S-753 31 Uppsala Biomedical Center
Home: +46 18 129021 Department of Molecular Biology
BMC: +46 18 4714214 BOX 590 S-751 24 UPPSALA Sweden
Fax +46 18 557723 http://evolution.bmc.uu.se/~thomas
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