Short Similarity Search

[Betsy L. Alberty]

Michael Morales wrote:
> 
> I am performing in situ hybridization using short (35-50 nucleotides)
> oligonucleotide probes.  I want to check the databases by FASTA and BLAST for
> other sequences that may have similarity to these.  Are there any special
> settings or programs that are optimal for use with short sequences?  Any
> favorite sites?  Any help would be greatly appreciated.
> 
> Mike Morales
> You may want to try HYBsimulator software.  Info on this software is at 
www.alsbyte.com. 
Betsy Alberty / ALSBYTE