On Mon, 17 Feb 1997 17:25:19 -0800, Harry Mangalam <mangalam at uci.edu> wrote:
>To wit: A program (any platform) that will search files or databases
>very degenerate sequences (with errors) and will further do proximity
>matching on those hits that are returned.
Take a look at Ross Overbeek's "scan_for_matches". I think it will
do exactly what you want it to.
Available from ftp://info.mcs.anl.gov/pub/futures_lab/CAVE as
Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at ebv.oncology.wisc.edu