Sequence align. randomizations

Steve Johnson sljohnsn at
Tue Feb 18 18:29:57 EST 1997

Can anyone suggest a program that will calculate a "similarity" value
for two protein sequences and then randomize one sequence and
recalculate the similarity. I need to generate some good statistical
values for some fairly similar sequences. I know that GCG's bestfit will
do this however, I would like to get more than 100 randomizations.

Steve Johnson
sljohnsn at

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