On 21 Feb 1997 13:18:06 GMT, Richard P Grant <rgrant at molbiol.ox.ac.uk.remove_this_bit> wrote:
>I want to compile it under Digital Unix 4.0a - can someone please point
>me at the source? 
Perhaps what you are looking for is "prss". This is part of Bill
Pearson's FASTA package - available from ftp://ftp.virginia.edu/pub/fasta
prss will shuffle a protein or DNA sequence for a user-defined number
of iterations and align them to the test sequence.
Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at ebv.oncology.wisc.edu