AA weighting matrices??

[cprice at unmc.edu]

In <32EE3095.41C6 at staff.uiuc.edu>, Steve Johnson <sljohnsn at staff.uiuc.edu> writes:

>Can someone explain to me the differences between the amino acid
>weighting matrices used in GCG's Pileup and Distances(uncorrected
>distance). Thanks.

Steve -

I just had a look at the GCG documentation, and the algorithms which 
defined these methods are all explained there, along with references back to
the original papers.  What is missing there?


Chad Price
University of Nebraska
cprice at molbio.unmc.edu
(402) 472-4527
(402) 559-9527  (T-Thurs)