The program CAP (contig assembly program) by Xiaoqiu Huang is available in MSWin form. You can get it with the SeqPup package for MSWin, and either use as a child-app called from SeqPup or run by itself. - Don ftp://iubio.bio.indiana.edu/molbio/seqpup/ -- -- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu