genbank ORFs > fasta ??

Will Fischer wfischer at sunflower.bio.indiana.edu
Tue Jul 8 08:34:10 EST 1997


Trevor Bezdek (trevor at leland.stanford.edu) wrote:
: Is there any program out there that converts files in standard genbank
: nucleotide format into a fasta file with all of the ORF translations?  All
: of the information is in the file, it would just be a pain to do it by
: hand.  

My perl script for this task ("gbgettrans") is available at 
http://www.bio.indiana.edu/~wfischer/Perl_Scripts/

-- 
____________________________________________________________
Will Fischer			

Biology Department             		wfischer at indiana.edu
Jordan Hall                   		http://www.bio.indiana.edu/~wfischer
Indiana University            		Lab:    812-855-2549
Bloomington, Indiana 47405 USA		FAX:    812-855-6705




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