Pairwise alignment of 200,000 and 20,000 bp sequences

William R. Pearson wrp at
Sun Jun 15 23:25:31 EST 1997

The lalign program (with plalign and flalign for graphical output) could
be used to display all of the alignments of two very long sequences.

align produces a single global alignment, which is probably not what
you want.

Bill Pearson

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