Pairwise alignment of 200,000 and 20,000 bp sequences

[Catherine Letondal]

Path: cleopatre.pasteur.fr!letondal
Newsgroups: bionet.software,bionet.molbio.methds-reagnts
From: letondal at pasteur.fr (Catherine  Letondal)
Distribution: world
X-Newsreader: mxrn 6.18-31
References:  <33A03DB8.BB58B5CA at scientist.com>
Reply-To: letondal at pasteur.fr (Catherine  Letondal)
Organization: Institut Pasteur, Paris
Subject: Re: Pairwise alignment of 200,000 and 20,000 bp sequences

In article <33A03DB8.BB58B5CA at scientist.com>, Max V Myakishev <max at scientist.com> writes:
>I am looking for the tool to perform 
>pairwise alignment of 200,000 and 20,000 bp sequences.
>
>Preferable computer platforms: WWW > PC > Mac > UNIX.

Check also :

LASSAP : LArge Scale Sequence compArison Package 

http://www-rocq.inria.fr/genome

(for Unix platforms, including Linux)

>
>I already tried many programs and most of them 
>are limited by the input sequence size 32000.
>
>Thanks
>
>Max V Myakishev, Ph.D.
>Email: max at scientist.com
>