FLIP: a Unix C program used to find/translate orfs

Nicolas Brossard brossard at bch.umontreal.ca
Tue Nov 25 15:50:35 EST 1997


Flip is a Unix C program used to find/translate orfs. Flip translates
and
reformats DNA sequences. The produced output files can be used by other
programs such as BBLAST (Pierre Rioux, 1994, a batch version of BLAST
(Altschul et al, J. Mol.Biol. 215, 403-410), FASTA (W. Pearson, Methods
enzymol.
183, 63-68), NIP (Queen & Korn, Nucl. Acids Res., 12, 581-599) for
further 
analysis.


HOW DO I GET IT ? 
-----------------

The latest version of the flip package can always be obtained by ftp at
the
address:

  ftp://megasun.bch.umontreal.ca/pub/flip/flip.tar.Z

Flip's complete documentation can be fetched by ftp from:

  ftp://megasun.bch.umontreal.ca/pub/flip/flip.doc

flip.doc is included in flip's distribution. 


REQUIREMENTS
------------

- In order to compile the source code, you need a Unix C compiler
(either
  gcc or cc).

Nicolas Brossard, for the OGMP.

-- 

*--------------------------------------------------------------------------*
  Nicolas Brossard                   | brossard at bch.umontreal.ca
  Universite de Montreal             | Telephone:    (514)-343-6111
(#5149)
  Departement de biochimie           | Fax:          (514)-343-2210
*-----------  http://megasun.bch.umontreal.ca/ogmp/ogmpid.html 
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