I have the x,y,z coordinates of a protein in PDB format.
One of the residues has an H-bonding with the rest of the protein.
Now I replace this residue with an other one which offers no H-bonding.
How can I predict the perturbations induced on the 3D-structure ?
Is there softwares for that (free or not) ?
Michel Petitjean, Email: petitjean at itodys.jussieu.fr
ITODYS (CNRS, URA34) ptitjean at ccr.jussieu.fr