Codon Usage analysis software

Jerry Learn learn at u.washington.edu
Tue Sep 30 10:23:16 EST 1997


The corect URL is:

http://www.ie.embnet.org/embnet.news/vol4_2/codon.html


In article <atlloyd-3009971327550001 at gen035.gen.tcd.ie>, atlloyd at tcd.ie
(Andrew T. Lloyd) wrote:

>  kkojima at sapmed.ac.jp (Kazunobu Kojima) wrote:
> 
> >      I'm looking for a PC or Win95 software which can allow me
> > to analyze codon usage bias from nt sequences. If the software
> > could calculate percentage of each base at each positon of the
> > codons, like "cdusage" program in PC/GENE, it will be quite 
> > helpful for my work.
> >      Thank you very much for your advice in advance.
> > 
> > Kazunobu Kojima      ( kkojima at sapmed.ac.jp )
> > Sapporo Medical University
> > Sapporo, JAPAN
> 
> ftp://acer.gen.tcd.ie/pub/cod/codons14.exe
> 
> will do all that and more.  Also read James McInerney's article
> in embnet.news:
> 
> http://www.ie.embnet.org/embnet.news/vol4_2/codons.html
> 
> For theory and practice and at least two software alternatives.
> 
> Andrew
> -- 
> Andrew T. Lloyd  Irish National Centre for BioInformatics  INCBI
> atlloyd at acer.gen.tcd.ie                   http://acer.gen.tcd.ie
> Tel: (+353)-1-608-1969    EMBnet Ireland    Fax: (+353)-679-8558




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