Codon Usage analysis software

Andrew T. Lloyd atlloyd at tcd.ie
Tue Sep 30 08:27:55 EST 1997


 kkojima at sapmed.ac.jp (Kazunobu Kojima) wrote:

>      I'm looking for a PC or Win95 software which can allow me
> to analyze codon usage bias from nt sequences. If the software
> could calculate percentage of each base at each positon of the
> codons, like "cdusage" program in PC/GENE, it will be quite 
> helpful for my work.
>      Thank you very much for your advice in advance.
> 
> Kazunobu Kojima      ( kkojima at sapmed.ac.jp )
> Sapporo Medical University
> Sapporo, JAPAN

ftp://acer.gen.tcd.ie/pub/cod/codons14.exe

will do all that and more.  Also read James McInerney's article
in embnet.news:

http://www.ie.embnet.org/embnet.news/vol4_2/codons.html

For theory and practice and at least two software alternatives.

Andrew
-- 
Andrew T. Lloyd  Irish National Centre for BioInformatics  INCBI
atlloyd at acer.gen.tcd.ie                   http://acer.gen.tcd.ie
Tel: (+353)-1-608-1969    EMBnet Ireland    Fax: (+353)-679-8558




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