Codon Usage analysis software

Andrew T. Lloyd atlloyd at
Tue Sep 30 08:27:55 EST 1997

 kkojima at (Kazunobu Kojima) wrote:

>      I'm looking for a PC or Win95 software which can allow me
> to analyze codon usage bias from nt sequences. If the software
> could calculate percentage of each base at each positon of the
> codons, like "cdusage" program in PC/GENE, it will be quite 
> helpful for my work.
>      Thank you very much for your advice in advance.
> Kazunobu Kojima      ( kkojima at )
> Sapporo Medical University
> Sapporo, JAPAN

will do all that and more.  Also read James McInerney's article

For theory and practice and at least two software alternatives.

Andrew T. Lloyd  Irish National Centre for BioInformatics  INCBI
atlloyd at         
Tel: (+353)-1-608-1969    EMBnet Ireland    Fax: (+353)-679-8558

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