Degenerate Primer generation from Multiple Alignments

Curtis R. Altmann altmanc at rockvax.rockefeller.edu
Wed Apr 1 12:19:17 EST 1998


I am looking for software which can take multiple sequence alignments in a
standard format such as the output from clustalw, GCG or DNAstar Megalign
and identify least and most degenerate oligos.  In searches of the web, I
have found one such program called Primegen.  I have not been able to obtain
this software (from University of Washington in Seattle).  It was written by
 Patrick J. O'Hara and Domenick Venezia.  

Any help in either obtaining this program or similar programs would be
greatly appreciated.

Curtis R. Altmann, Ph.D.
The Rockefeller University




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