SeqPup, v. 0.8e biosequence editor update (feature displays)
gilbertd at bio.indiana.edu
Wed Apr 29 01:56:54 EST 1998
SeqPup, version 0.8e, April 1998
This release adds sequence feature table display and marking.
SeqPup is a biological sequence editor and analysis program. It includes links
to network services and external analysis programs. It is usable on common
computer systems that support the Java 1.1 runtime environment, including
Macintosh, MS-Windows and X-Windows.
multiple sequence alignment and single sequence editing
read and write several sequence file formats
* sequence feature editing, manipulation and marking in prints
translate dna/protein, consensus, reverse/complement, and distance methods
pretty print of alignments and sequences with boxed and shaded regions
Internet Sequence Retrieval System (SRS), and NCBI-BLAST searches
User-definable links to external analysis programs, including
ClustalW multiple alignment, CAP contig assembly, tacg restriction map
Remote program client-server interface, using CORBA protocol
( * - major improvement this version)
This application is a work in progress; it has bugs. It may be useful to you
as is, but it is still prone to problems.
Find this software at
Note - the SeqPup.jar java archive only has been updated.
If you haven't a prior release of SeqPup 0.8, fetch one of
the full-package/ items, as well as the new SeqPup.jar file.
Comments, bug reports and suggestions are welcome and can be e-mailed to
SeqPup at Bio.Indiana.Edu.
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu
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