BP2.pm for NCBI Blast 2?

josephryan at yahoo.com josephryan at yahoo.com
Mon Aug 3 17:41:04 EST 1998


> Has anyone modified Ian Korf's BP2.pm to support NCBI BLAST v2.0x

Wayne,

NHGRI::Blastall.pm is not a modification of Ian Korf's code but the
functionality is similar.   I have included the Release announcement.
NHGRI::Blastall.pm is Alpha software but should be helpful.  If you
have questions, comments, or suggestions send me mail to

          @
    jfryan^nhgri.nih.gov

---------------------------------------------------------------------
This message is to announce the first public alpha release of
NHGRI::Blastall.pm.  Docs and other info available at
http://genome.nhgri.nih.gov/blastall/.  Feedback is appreciated.

This module is designed to run NCBI's standalone BLAST or initialize
existing BLAST reports and provide access for various elements of
the report. Blastall.pm also provides a filter method which allows
for filtering against an ecoli, repeat or any other database.
The motivation behind NHGRI::Blastall.pm was for it
to work with the forthcoming version of our NHGRI-WebBLAST
http://genome.nhgri.nih.gov/webblast/.

NHGRI::Blastall.pm and NHGRI-WebBLAST are public domain software.
------------------------------------------------------------------------

In article <35C5A8BB.5A212216 at lilly.com>,
  Wayne Kauffman <kauffman_e_wayne_ii at lilly.com> wrote:
> BLAST parsing time....
>
> Has anyone modified Ian Korf's BP2.pm to support NCBI BLAST v2.0x and is
> the modified BP2 code available? I am trying not to re-invent the wheel
> if it has been already accomplished.  :-)
>
> Wayne Kauffman
> Eli Lilly and Company
> Lilly Corporate Center, MS0444
> Indianapolis, IN 46285
>
> 317-276-9750
> wayne at lilly.com
>
>

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