PDB amino acid positions

islam islam at icrf.icnet.uk
Thu Feb 5 09:12:33 EST 1998


Iddo,

This is a straight forward request, but for which platforms
do you need the program and how do you want the output format ?
One word of caution - there may be missing residues in the data
in which case the numbering may not truly represent the numberical
order of the residues.

Iddo Friedberg wrote:
> 
> Hi All,
> 
> Does anybody know of a good, robust  program which will accept a PDB
> file as input, and for the output deliver for each amino acid it's PDB
> position number. Including such vagaries as negative numbering (some
> files have them), and non-numerical positions (as in serine proteinases,
> where there are such things as 65A).
> 
> Please reply by email, as well as to this newsgroup.
> 
> Many thanks,
> 
> Iddo
____________________________________________
Suhail A Islam
Biomolecular Modelling Laboratory
Imperial Cancer Research Fund, P.O. Box 123
44 Lincoln's Inn Fields, London WC2A 3PX
Tel: (0171) 269 3380, Fax: (0171) 269 3258
email: islam at icrf.icnet.uk
http://www.icnet.uk/bmm/
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