PDB amino acid positions

Gerard Kleywegt gerard at xray.bmc.uu.se
Fri Feb 6 19:30:14 EST 1998


In article <34D98C11.41C6 at cc.huji.ac.il>, Iddo Friedberg
<idoerg at cc.huji.ac.il> wrote:

>Hi All,
>
>Does anybody know of a good, robust  program which will accept a PDB
>file as input, and for the output deliver for each amino acid it's PDB
>position number. Including such vagaries as negative numbering (some
>files have them), and non-numerical positions (as in serine proteinases,
>where there are such things as 65A). 
>
>Please reply by email, as well as to this newsgroup.
>
>
>Many thanks,
>
>Iddo

cat filename.pdb | grep ^ATOM | grep CA | cut -c18-27

--cd
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Gerard Kleywegt
mailto:gerard at xray.bmc.uu.se
http://alpha2.bmc.uu.se/~gerard/




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