alignment software

[Ashok Aiyar]

On Tue, 20 Jan 1998 16:02:26 +0200,
Junaid Gamieldien (junaid at techno.sanbi.ac.za) wrote:
>Does anyone know of software that will make DNA alignments from protein
>alignments. The DNA sequences are available (DNA versions of the aligned
>protein sequences)

There is only one good program for what you wish to do.  Take a look at
Burkhard Morgernstern's DIALIGN.  It does exactly what you would like:
nucleotide alignments based on translation to peptide sequence

Available from:
ftp://ariane.gsf.de/pub/unix/dialign
http://www.gsf.de/biodv/dialign.html 

Cheers,
Ashok
-- 
Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at ebv.oncology.wisc.edu