alignment software

Ashok Aiyar aiyar at
Tue Jan 20 11:48:15 EST 1998

On Tue, 20 Jan 1998 16:02:26 +0200,
Junaid Gamieldien (junaid at wrote:
>Does anyone know of software that will make DNA alignments from protein
>alignments. The DNA sequences are available (DNA versions of the aligned
>protein sequences)

There is only one good program for what you wish to do.  Take a look at
Burkhard Morgernstern's DIALIGN.  It does exactly what you would like:
nucleotide alignments based on translation to peptide sequence

Available from: 

Ashok Aiyar, Ph.D.
McArdle Laboratory for Cancer Research
aiyar at

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