New version of DNA sequence simulator, Seq-Gen

Andrew Rambaut andrew.rambaut at zoo.ox.ac.uk.remove_this
Wed Jul 29 21:37:30 EST 1998


I have just put version 1.06 of Seq-Gen (Unix and Mac versions) on our web
site <http://evolve.zoo.ox.ac.uk/Seq-Gen.html>.

Seq-Gen is a program that will simulate the evolution of nucleotide
sequences along a phylogeny. A range of models of molecular evolution are
implemented including the general reversible model (REV). Site-specific
rate heterogeneity may be incorporated in a number of ways (gamma
distributed and codon based).

The new version allows the user to supply an ancestral sequence for the 
root from which the other sequences will be evolved (otherwise a random
sequence is used).

Andrew.

=====================================================================
  Andrew Rambaut,           EMAIL - Andrew.Rambaut at zoology.ox.ac.uk
  Zoology Department,         WWW - http://evolve.zoo.ox.ac.uk/
  University of Oxford,
  South Parks Road, Oxford, England
=====================================================================





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