CDS parse software for UNIX - is something available?

Roland Walker walker at ncbi.nlm.nih.gov
Thu Jun 4 15:12:05 EST 1998


Alexander Kanapin wrote:
> I am looking for softwrare (source code) for simple parsing of GenBank
> CDS field. Does anybody know about such tools? I need some kind of
> automatic splicing - to read CDS data and produse new sequence string
> according to CDS coordinates of coding regions from entry sequence.

Such a program (called feature2fasta) is included in the SEALS package

  http://www.ncbi.nlm.nih.gov/Walker/SEALS/index.html

Just write me if you have any questions about how to make the script
do exactly what you want.

R




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