PDB -> SwissPROT conversion?

Francis Durst francis.durst at bota-ulp.u-strasbg.fr
Fri Jun 5 18:23:35 EST 1998


In article <6l7588$j4n$1 at netnews.upenn.edu> alwang at blue.seas.upenn.edu (Al Wang) writes:
>From: alwang at blue.seas.upenn.edu (Al Wang)
>Subject: PDB -> SwissPROT conversion?
>Date: 4 Jun 1998 21:57:28 GMT

>Hi,

>Does anyone know what's a good way to take a Brookhaven PDB file, extract 
>the sequence information, and save it in SwissPROT format?  If it can 
>also extract the secondary structure features, even better.  

>Thanks,
>Al

The Swiss-pdb viewer (at http://expasy.hcuge.ch/) which works fine on MacOS 
and Win95/NT, will import any .pdb file and save the seq in Fasta format. 

En plus, the last version, 3.0 is an excellent viewer and has provision for 
'mutation' of residues, changing bond angles and other niceties.

Francis
===============================================================
Francis Durst, IBMP
Strasbourg, France




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