PDB -> SwissPROT conversion?

Francis Durst francis.durst at bota-ulp.u-strasbg.fr
Sat Jun 6 10:31:07 EST 1998


In article <6l7588$j4n$1 at netnews.upenn.edu> alwang at blue.seas.upenn.edu (Al Wang) writes:
>From: alwang at blue.seas.upenn.edu (Al Wang)
>Subject: PDB -> SwissPROT conversion?
>Date: 4 Jun 1998 21:57:28 GMT

>Hi,

>Does anyone know what's a good way to take a Brookhaven PDB file, extract 
>the sequence information, and save it in SwissPROT format?  If it can 
>also extract the secondary structure features, even better.  

>Thanks,
>Al

Hi there,

Yesterday I pointed that the Swiss pdb viewer could extract the seq, you can 
also use Antheprot which has its own viewer and can also use Rasmol, and 
extract the aa seq, save in fasta format, make all sorts of predictions 
(interesting to compare with the actual stracture) etc..
The Antheprot version I have is 3_5b, works fine on a PC

Francis

>--
>__________________________________________
>al wang
>alwang at doubt.com
>http://www.seas.upenn.edu/~alwang/

>"What's My Solution?" 
>"Noise Pollution!"

===============================================================
Francis Durst, IBMP
Strasbourg, France




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